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  5. Nbi_g11799

Nbi_g11799 (CHR11)


Aliases : CHR11

Description : not classified & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11799

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.04 OrthoFinder output from all 47 species
Ala_g22712 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.09 OrthoFinder output from all 47 species
Als_g01913 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g12795 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05226 CHR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g08885 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g09627 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene14150.t1 CHR11, Aspi01Gene14150 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14153.t1 Aspi01Gene14153 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene45824.t1 CHR5, Aspi01Gene45824 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50287.t1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0003.g007848 CHR01, CHR1,... not classified & original description: CDS=1-2349 0.03 OrthoFinder output from all 47 species
Ceric.02G040400.1 CHR5, Ceric.02G040400 not classified & original description: pacid=50584074... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.02 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Dac_g05131 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g07364 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g42061 CHR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01018979001 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_16888 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
LOC_Os03g51230.2 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
LOC_Os09g27060.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.06 OrthoFinder output from all 47 species
Len_g14805 CHR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27757 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
MA_42406g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Mp4g12200.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Msp_g27750 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44223 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g12699 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29413 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g079690.4.1 ATCHR12, Solyc01g079690 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
Solyc02g062780.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.04 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
Spa_g10521 CHR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g13795 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.12 OrthoFinder output from all 47 species
Tin_g05645 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromaTin... 0.03 OrthoFinder output from all 47 species
Tin_g08903 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g11014 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g31900 CHR5 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g37141 CHR17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e011541_P001 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e017643_P001 CHR17, Zm00001e017643 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 185 465
IPR019787 Znf_PHD-finger 800 843
IPR001650 Helicase_C 486 599
No external refs found!