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  5. Nbi_g11598

Nbi_g11598 (EDF4, RAV1)


Aliases : EDF4, RAV1

Description : AP2-RAV-type transcription factor *(EDF) & original description: none


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11598
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00040300 NGA1,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00047p00199500 EDF4, RAV1,... No description available 0.03 OrthoFinder output from all 47 species
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g058439 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Adi_g058440 EDF3 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Adi_g114045 NGA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32030 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Aev_g44854 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Ala_g04649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11266 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G039200.1 EDF4, RAV1,... AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Dac_g22480 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.06 OrthoFinder output from all 47 species
Dac_g39956 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Dde_g29898 NGA3 RAV/NGATHA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16987 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_18035 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Gb_33917 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
LOC_Os01g04750.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os01g04800.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
LOC_Os01g49830.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os10g39190.1 NGA1, LOC_Os10g39190 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Len_g14264 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.06 OrthoFinder output from all 47 species
Len_g36994 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g21540 NGA1 RAV/NGATHA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436315g0020 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
MA_19420g0020 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
MA_3503583g0010 NGA1 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
MA_70029g0010 NGA1 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_865117g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Nbi_g33705 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g22199 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Solyc05g009790.1.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Solyc08g013700.1.1 NGA3, Solyc08g013700 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Solyc09g010230.2.1 Solyc09g010230 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e000156_P001 NGA3, Zm00001e000156 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e015451_P001 NGA3, Zm00001e015451 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e016956_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Zm00001e023240_P001 NGA3, Zm00001e023240 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e024165_P001 Zm00001e024165 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e026443_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e040214_P001 NGA3, Zm00001e040214 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 177 223
IPR003340 B3_DNA-bd 360 460
No external refs found!