AT1G32490 (ESP3, EMB2733)


Aliases : ESP3, EMB2733

Description : RNA helicase family protein


Gene families : OG_01_0000259 (Gene family) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G32490
Cluster HCCA cluster: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.2 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.01 Gene family
Cpa|evm.model.tig00022075.25 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
Cre07.g349100 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
GSVIVT01007911001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.03 Gene family
GSVIVT01028153001 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.03 Gene family
GSVIVT01029863001 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.04 Gene family
LOC_Os02g19860 Os02g0301500 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.03 Gene family
LOC_Os07g32430 Os07g0508000 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.03 Gene family
LOC_Os08g24760 Os08g0335000 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.02 Gene family
Solyc03g115390.3.1 Solyc03g115390.3 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.04 Gene family
Zm00001d015893 GRMZM2G029258 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004004 ATP-dependent RNA helicase activity ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0007267 cell-cell signaling RCA Arabidopsis.org
BP GO:0008380 RNA splicing NAS Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy NAS Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
BP GO:0035194 posttranscriptional gene silencing by RNA IMP Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011709 DUF1605 944 1021
IPR007502 Helicase-assoc_dom 796 871
IPR001650 Helicase_C 604 733
No external refs found!