1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g11389

Nbi_g11389 (AMS)


Aliases : AMS

Description : transcriptional regulator *(DYT1/AMS) & original description: none


Gene families : OG0006543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006543_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11389
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 OrthoFinder output from all 47 species
Adi_g087464 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Adi_g105556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70080 AMS transcriptional regulator *(DYT1/AMS) & original... 0.22 OrthoFinder output from all 47 species
Dcu_g12007 AMS transcriptional regulator *(DYT1/AMS) & original... 0.07 OrthoFinder output from all 47 species
Dde_g46165 AMS transcriptional regulator *(DYT1/AMS) & original... 0.21 OrthoFinder output from all 47 species
GSVIVT01013720001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
GSVIVT01024008001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
LOC_Os02g02820.1 AMS, LOC_Os02g02820 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Len_g57915 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
MA_89559g0020 No alias Transcription factor ABORTED MICROSPORES OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g44010 AMS transcriptional regulator *(DYT1/AMS) & original... 0.12 OrthoFinder output from all 47 species
Pnu_g34078 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01138 AMS transcriptional regulator *(DYT1/AMS) & original... 0.15 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009349 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Sam_g17963 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g49026 No alias transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Solyc08g062780.2.1 AMS, Solyc08g062780 transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
Spa_g47867 AMS transcriptional regulator *(DYT1/AMS) & original... 0.16 OrthoFinder output from all 47 species
Tin_g45475 AMS transcriptional regulator *(DYT1/AMS) & original... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 7 153
IPR011598 bHLH_dom 400 443
No external refs found!