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  5. Nbi_g10879

Nbi_g10879


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g10879

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene27195.t1 emb1354, CDC48C,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27196.t1 emb1354, CDC48C,... platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g43329 CDC48B platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Len_g41549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18721 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c12_11370V3.1 Pp3c12_11370 AAA-type ATPase family protein 0.02 OrthoFinder output from all 47 species
Pp3c7_25950V3.1 CDC48A, CDC48,... ATPase, AAA-type, CDC48 protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003605 CDC48B not classified & original description: CDS=1-351 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR015415 Vps4_C 728 768
IPR041569 AAA_lid_3 401 443
IPR041569 AAA_lid_3 677 717
IPR004201 Cdc48_dom2 136 198
IPR003338 CDC4_N-term_subdom 34 115
IPR003959 ATPase_AAA_core 522 655
IPR003959 ATPase_AAA_core 249 378
No external refs found!