Nbi_g10879

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000128 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g10879

Target	Alias	Description	ECC score	Gene Family Method
Cba_g67891	CDC48A, CDC48, ATCDC48	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 39 species
Nbi_g18721	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 39 species
Pir_g49868	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.01	OrthoFinder output from all 39 species
Pnu_g10495	No alias	not classified & original description: none	0.01	OrthoFinder output from all 39 species
Sam_g25401	No alias	not classified & original description: none	0.01	OrthoFinder output from all 39 species
Smo145748	No alias	Cell division cycle protein 48 homolog OS=Glycine max	0.01	OrthoFinder output from all 39 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015415	Vps4_C	728	768
IPR041569	AAA_lid_3	401	443
IPR041569	AAA_lid_3	677	717
IPR004201	Cdc48_dom2	136	198
IPR003338	CDC4_N-term_subdom	34	115
IPR003959	ATPase_AAA_core	522	655
IPR003959	ATPase_AAA_core	249	378

External Links

No external refs found!