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  5. Nbi_g10547

Nbi_g10547 (RPT5A, ATS6A.2)


Aliases : RPT5A, ATS6A.2

Description : regulatory component *(RPT5) of 26S proteasome & original description: none


Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g10547

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00104360 RPT5A, ATS6A.2,... Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
AT1G09100 RPT5B 26S proteasome AAA-ATPase subunit RPT5B 0.04 OrthoFinder output from all 47 species
Aop_g07899 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cre10.g439150 RPT5A, ATS6A.2 Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Dac_g16496 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Dde_g12003 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
LOC_Os02g56000.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Solyc01g099760.3.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Spa_g12836 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 364 408
IPR003959 ATPase_AAA_core 209 341
IPR032501 Prot_ATP_ID_OB_C 75 151
No external refs found!