AT1G21720 (PBC1)


Aliases : PBC1

Description : proteasome beta subunit C1


Gene families : OG_01_0002888 (Gene family) Phylogenetic Tree(s): OG0002888_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G21720
Cluster HCCA cluster: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000826.22 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.05 Gene family
Cre06.g267500 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.25 Gene family
GSVIVT01008836001 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.16 Gene family
LOC_Os06g43570 Os06g0643100 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.05 Gene family
MA_70161g0010 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.06 Gene family
Smo266913 PACid_15412087 No description available 0.02 Gene family
Solyc04g009410.3.1 Solyc04g009410.3 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.09 Gene family
Zm00001d015526 GRMZM2G117544 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.07 Gene family
Zm00001d036756 No alias 29.5.11.20 protein.degradation.ubiquitin.proteasom... 0.03 Gene family
Zm00001d036758 GRMZM2G045371 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.08 Gene family
Zm00001d046600 GRMZM2G092975 29.5.11.20 protein.degradation.ubiquitin.proteasom 20S... 0.18 Gene family

Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005774 vacuolar membrane IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005839 proteasome core complex TAS Arabidopsis.org
BP GO:0006094 gluconeogenesis RCA Arabidopsis.org
BP GO:0006096 glycolytic process RCA Arabidopsis.org
BP GO:0006511 ubiquitin-dependent protein catabolic process TAS Arabidopsis.org
BP GO:0006635 fatty acid beta-oxidation RCA Arabidopsis.org
MF GO:0008233 peptidase activity ISS Arabidopsis.org
BP GO:0009407 toxin catabolic process RCA Arabidopsis.org
BP GO:0009651 response to salt stress RCA Arabidopsis.org
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process RCA Arabidopsis.org
BP GO:0043248 proteasome assembly RCA Arabidopsis.org
BP GO:0046686 response to cadmium ion RCA Arabidopsis.org
BP GO:0051788 response to misfolded protein RCA Arabidopsis.org
BP GO:0080129 proteasome core complex assembly RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 7 189
No external refs found!