AT1G20823

Description : RING/U-box superfamily protein

Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT1G20823
Cluster	HCCA cluster: Cluster_159

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os02g15080	Os02g0248900	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.07	Gene family
LOC_Os02g36330	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
LOC_Os06g09310	Os06g0192800	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_114175g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_1143g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_12188g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_12363g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_26001g0020	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
MA_373963g0010	No alias	No description available	0.02	Gene family
MA_816764g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_904294g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d016682	GRMZM5G860214	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d030945	GRMZM2G124423	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d052268	GRMZM2G080079	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Arabidopsis.org
CC	GO:0009507	chloroplast	ISM	Arabidopsis.org
CC	GO:0009536	plastid	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Arabidopsis.org
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	110	153

External Links

No external refs found!