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  5. Nbi_g10179

Nbi_g10179


Description : not classified & original description: none


Gene families : OG0007491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g10179

Target Alias Description ECC score Gene Family Method Actions
Adi_g117153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03588 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05627 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g19292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13790 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024762 OTP84 not classified & original description: CDS=238-3549 0.04 OrthoFinder output from all 47 species
Azfi_s0099.g043991 OTP84 not classified & original description: CDS=230-3472 0.04 OrthoFinder output from all 47 species
Cba_g13501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G002000.1 Ceric.15G002000 not classified & original description: pacid=50640344... 0.03 OrthoFinder output from all 47 species
Ceric.17G084700.1 Ceric.17G084700 not classified & original description: pacid=50618199... 0.03 OrthoFinder output from all 47 species
Dac_g10625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03497 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g21687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22749 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 387 435
IPR002885 Pentatricopeptide_repeat 789 835
IPR002885 Pentatricopeptide_repeat 488 533
IPR002885 Pentatricopeptide_repeat 285 332
IPR032867 DYW_dom 1096 1175
IPR002885 Pentatricopeptide_repeat 594 621
IPR002885 Pentatricopeptide_repeat 695 721
IPR002885 Pentatricopeptide_repeat 463 483
No external refs found!