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  5. Nbi_g10154

Nbi_g10154 (FPA)


Aliases : FPA

Description : regulatory protein *(FPA) of TNL-mediated effector-triggered immunity & original description: none


Gene families : OG0001767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g10154
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT2G43410 FPA RNA binding 0.03 OrthoFinder output from all 47 species
Adi_g089075 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g03378 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Aev_g09280 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g25752 FPA regulatory protein *(FPA) of TNL-mediated... 0.05 OrthoFinder output from all 47 species
Cba_g11671 FPA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.11G013200.1 FPA, Ceric.11G013200 not classified & original description: pacid=50595357... 0.07 OrthoFinder output from all 47 species
Ehy_g20663 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010842001 FPA Flowering time control protein FPA OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
LOC_Os09g12730.1 LOC_Os09g12730 Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os09g34070.1 FPA, LOC_Os09g34070 Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g23179 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_61973g0010 No alias Flowering time control protein FPA OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Mp4g06830.1 FPA Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g17152 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18347 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19678 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37666 FPA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11107 FPA regulatory protein *(FPA) of TNL-mediated... 0.04 OrthoFinder output from all 47 species
Sam_g18661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g011050.2.1 Solyc12g011050 Flowering time control protein FPA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e034721_P001 FPA, Zm00001e034721 Flowering time control protein FPA OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 71 134
IPR000504 RRM_dom 148 210
IPR000504 RRM_dom 279 330
IPR012921 SPOC_C 572 681
No external refs found!