AT1G18485

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT1G18485
Cluster	HCCA cluster: Cluster_192

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021435.54	No alias	No description available	0.03	Gene family
GSVIVT01009407001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
GSVIVT01009789001	No alias	No description available	0.08	Gene family
GSVIVT01015233001	No alias	No description available	0.02	Gene family
GSVIVT01017365001	No alias	No description available	0.03	Gene family
GSVIVT01020758001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
GSVIVT01021756001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
GSVIVT01023971001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
GSVIVT01031251001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.1	Gene family
GSVIVT01032721001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
GSVIVT01033190001	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.13	Gene family
GSVIVT01033389001	No alias	No description available	0.04	Gene family
LOC_Os01g10800	Os01g0205200	No description available	0.06	Gene family
LOC_Os01g41650	Os01g0600400	No description available	0.04	Gene family
LOC_Os01g62910	Os01g0848300	No description available	0.06	Gene family
LOC_Os03g04390	Os03g0136700	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
LOC_Os04g39410	Os04g0469400	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.07	Gene family
LOC_Os05g50950	Os05g0586900	No description available	0.09	Gene family
LOC_Os06g30940	Os06g0506100	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_100287g0010	No alias	No description available	0.02	Gene family
MA_10426444g0010	No alias	No description available	0.02	Gene family
MA_10433543g0010	No alias	No description available	0.02	Gene family
MA_10436764g0010	No alias	No description available	0.02	Gene family
MA_109221g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_11074g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_122899g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_123466g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_135075g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_17949g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_20599g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_20622g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_322292g0010	No alias	No description available	0.03	Gene family
MA_38266g0010	No alias	No description available	0.03	Gene family
MA_43615g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.06	Gene family
MA_4438g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
MA_519985g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_653417g0010	No alias	No description available	0.03	Gene family
MA_77675g0010	No alias	No description available	0.03	Gene family
MA_80970g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_82569g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
MA_86628g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
MA_89214g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
MA_94165g0010	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
MA_9526611g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
MA_953793g0020	No alias	No description available	0.03	Gene family
Smo105356	PACid_15414251	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Smo107192	PACid_15418574	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Smo47998	PACid_15423210	No description available	0.02	Gene family
Smo84657	PACid_15418630	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Smo85415	PACid_15419909	No description available	0.04	Gene family
Smo90123	PACid_15410274	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
Smo98955	PACid_15417483	No description available	0.04	Gene family
Solyc01g007850.2.1	Solyc01g007850.2	No description available	0.02	Gene family
Solyc01g095690.2.1	Solyc01g095690.2	No description available	0.04	Gene family
Solyc02g081900.3.1	Solyc02g081900.3	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.06	Gene family
Solyc11g066920.1.1	Solyc11g066920.1	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.04	Gene family
Zm00001d020825	GRMZM5G851929	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Zm00001d025656	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.03	Gene family
Zm00001d027555	GRMZM2G176523	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.07	Gene family
Zm00001d031535	GRMZM2G076257	No description available	0.11	Gene family
Zm00001d032185	GRMZM2G161368	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.05	Gene family
Zm00001d039193	GRMZM2G440349	No description available	0.05	Gene family

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Arabidopsis.org
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Arabidopsis.org
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	RCA	Arabidopsis.org
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	837	960
IPR002885	Pentatricopeptide_repeat	563	593
IPR002885	Pentatricopeptide_repeat	359	386
IPR002885	Pentatricopeptide_repeat	254	283
IPR002885	Pentatricopeptide_repeat	463	491
IPR002885	Pentatricopeptide_repeat	226	252
IPR002885	Pentatricopeptide_repeat	150	198
IPR002885	Pentatricopeptide_repeat	662	708

External Links

No external refs found!

AT1G18485

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation