AT1G05460 (SDE3)


Aliases : SDE3

Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG_01_0002518 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002518_tree ,
OG_02_0003674 (LandPlants) Phylogenetic Tree(s): OG_02_0003674_tree ,
OG_03_0003078 (SeedPlants) Phylogenetic Tree(s): OG_03_0003078_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G05460
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Cre12.g542450 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc06g054020.3.1 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g054020.3.1 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.03 LandPlants
Solyc06g054020.3.1 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response IMP Interproscan
BP GO:0035194 post-transcriptional gene silencing by RNA IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!