AT1G05460 (SDE3)

Aliases : SDE3

Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein

Gene families : OG_01_0002518 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002518_tree ,
OG_02_0003674 (LandPlants) Phylogenetic Tree(s): OG_02_0003674_tree ,
OG_03_0003078 (SeedPlants) Phylogenetic Tree(s): OG_03_0003078_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G05460
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g542450	No alias	Probable RNA helicase SDE3 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc06g054020.3.1	No alias	Probable RNA helicase SDE3 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc06g054020.3.1	No alias	Probable RNA helicase SDE3 OS=Arabidopsis thaliana...	0.03	LandPlants
Solyc06g054020.3.1	No alias	Probable RNA helicase SDE3 OS=Arabidopsis thaliana...	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003724	RNA helicase activity	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	IMP	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0016458	gene silencing	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0035194	post-transcriptional gene silencing by RNA	IMP	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G05460 (SDE3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation