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  5. Nbi_g09990

Nbi_g09990


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g09990

Target Alias Description ECC score Gene Family Method Actions
Ehy_g17496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_31784 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.04 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 232 289
IPR002885 Pentatricopeptide_repeat 451 482
IPR002885 Pentatricopeptide_repeat 731 760
IPR002885 Pentatricopeptide_repeat 310 342
IPR002885 Pentatricopeptide_repeat 353 381
IPR002885 Pentatricopeptide_repeat 179 207
IPR002885 Pentatricopeptide_repeat 143 172
IPR002885 Pentatricopeptide_repeat 664 711
IPR002885 Pentatricopeptide_repeat 525 573
IPR002885 Pentatricopeptide_repeat 596 642
IPR002885 Pentatricopeptide_repeat 384 430
No external refs found!