AT1G17150


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000381 (Gene family) Phylogenetic Tree(s): OG0000381_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G17150
Cluster HCCA cluster: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT1G78400 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT2G15460 No alias Pectin lyase-like superfamily protein 0.01 Gene family
AT2G15470 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT3G07820 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G48140 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01020794001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os01g33300 Os01g0517500 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os06g40880 Os06g0611400 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc10g047570.2.1 Solyc10g047570.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d015821 GRMZM2G151755 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0005975 carbohydrate metabolic process ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 60 389
No external refs found!