AT1G16280 (AtRH36, SWA3, RH36)


Aliases : AtRH36, SWA3, RH36

Description : RNA helicase 36


Gene families : OG_01_0001498 (Gene family) Phylogenetic Tree(s): OG0001498_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G16280
Cluster HCCA cluster: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.20 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.04 Gene family
Cpa|evm.model.tig00021122.18 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.02 Gene family
Cre12.g505200 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.1 Gene family
GSVIVT01036761001 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.03 Gene family
LOC_Os03g46610 Os03g0669000 29.2.2.3.5 protein.synthesis.ribosome... 0.03 Gene family
LOC_Os07g43980 Os07g0633500 29.2.2.3.5 protein.synthesis.ribosome... 0.05 Gene family
Solyc10g007550.3.1 Solyc10g007550.3 29.2.2.3.5 protein.synthesis.ribosome... 0.13 Gene family
Zm00001d014787 GRMZM2G075027 29.2.2.3.5 protein.synthesis.ribosome... 0.08 Gene family
Zm00001d022246 GRMZM2G099253 29.2.2.3.5 protein.synthesis.ribosome... 0.12 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006364 rRNA processing IMP Arabidopsis.org
BP GO:0006606 protein import into nucleus RCA Arabidopsis.org
MF GO:0008026 ATP-dependent helicase activity ISS Arabidopsis.org
BP GO:0009553 embryo sac development IMP Arabidopsis.org
BP GO:0009561 megagametogenesis IMP Arabidopsis.org
BP GO:0009791 post-embryonic development IMP Arabidopsis.org
CC GO:0090406 pollen tube IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 82 250
IPR001650 Helicase_C 290 397
No external refs found!