AT1G15510 (VAC1, ECB2, ATECB2)

Aliases : VAC1, ECB2, ATECB2

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0008957 (Gene family) Phylogenetic Tree(s): OG0008957_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G15510
Cluster HCCA cluster: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017209001 No alias 35.1.5 not ontology.pentatricopeptide (PPR)... 0.12 Gene family
LOC_Os05g49920 Os05g0574800 35.1.5 not ontology.pentatricopeptide (PPR)... 0.14 Gene family
Solyc03g119950.1.1 Solyc03g119950.1 35.1.5 not ontology.pentatricopeptide (PPR)... 0.19 Gene family
Zm00001d039096 GRMZM2G455587 35.1.5 not ontology.pentatricopeptide (PPR)... 0.24 Gene family

Type GO Term Name Evidence Source
BP GO:0009416 response to light stimulus IEP
BP GO:0009451 RNA modification IMP
CC GO:0009507 chloroplast IDA
CC GO:0009507 chloroplast ISM
BP GO:0009658 chloroplast organization IMP
BP GO:0040007 growth IMP
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 307
IPR002885 Pentatricopeptide_repeat 361 409
IPR002885 Pentatricopeptide_repeat 159 206
IPR002885 Pentatricopeptide_repeat 561 610
IPR002885 Pentatricopeptide_repeat 465 491
IPR002885 Pentatricopeptide_repeat 437 463
IPR002885 Pentatricopeptide_repeat 66 89
IPR032867 DYW_dom 735 858
No external refs found!