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  5. Nbi_g09583

Nbi_g09583 (PAM68)


Aliases : PAM68

Description : protein involved in PS-II assembly *(PAM68) & original description: none


Gene families : OG0005725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g09583

Target Alias Description ECC score Gene Family Method Actions
Cba_g10153 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.04 OrthoFinder output from all 47 species
Ceric.26G045700.1 PAM68, Ceric.26G045700 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g28925 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.02 OrthoFinder output from all 47 species
Dde_g17957 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.04 OrthoFinder output from all 47 species
LOC_Os06g21530.1 PAM68, LOC_Os06g21530 PAM68 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
LOC_Os10g38910.1 LOC_Os10g38910 PAM68 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Len_g15118 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.05 OrthoFinder output from all 47 species
Sam_g13719 No alias protein involved in PS-II assembly *(PAM68) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021855 PAM68-like 58 193
No external refs found!