AT1G12250


Description : Pentapeptide repeat-containing protein


Gene families : OG_01_0005034 (Gene family) Phylogenetic Tree(s): OG0005034_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G12250
Cluster HCCA cluster: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01001267001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os02g42960 Os02g0643500 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo96317 PACid_15406877 No description available 0.03 Gene family
Solyc08g079110.3.1 Solyc08g079110.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009534 chloroplast thylakoid IDA Arabidopsis.org
CC GO:0009535 chloroplast thylakoid membrane IDA Arabidopsis.org
CC GO:0009543 chloroplast thylakoid lumen ISS Arabidopsis.org
CC GO:0009579 thylakoid IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001646 5peptide_repeat 176 208
IPR001646 5peptide_repeat 134 170
No external refs found!