AT1G08540 (ATSIG1, SIGB, ATSIG2,...)


Aliases : ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1

Description : RNApolymerase sigma subunit 2


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G08540
Cluster HCCA cluster: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.14 Gene family
GSVIVT01025717001 No alias No description available 0.1 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
LOC_Os03g16430 Os03g0271100 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
LOC_Os05g51150 Os05g0589200 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
LOC_Os08g14450 Os08g0242800,... No description available 0.04 Gene family
LOC_Os11g26160 Os11g0448400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.17 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Smo117159 PACid_15403291 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.17 Gene family
Solyc01g087690.2.1 Solyc01g087690.2 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.06 Gene family
Zm00001d049160 GRMZM2G143392 27.3.85 RNA.regulation of transcription.sigma like plant... 0.16 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS Arabidopsis.org
BP GO:0006098 pentose-phosphate shunt RCA Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation IDA Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation TAS Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
BP GO:0006364 rRNA processing RCA Arabidopsis.org
BP GO:0006399 tRNA metabolic process IMP Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
BP GO:0009637 response to blue light IGI Arabidopsis.org
BP GO:0009637 response to blue light RCA Arabidopsis.org
BP GO:0009658 chloroplast organization IMP Arabidopsis.org
BP GO:0009902 chloroplast relocation RCA Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0010114 response to red light IEP Arabidopsis.org
BP GO:0010114 response to red light RCA Arabidopsis.org
BP GO:0010218 response to far red light RCA Arabidopsis.org
BP GO:0016117 carotenoid biosynthetic process RCA Arabidopsis.org
MF GO:0016987 sigma factor activity ISS Arabidopsis.org
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Arabidopsis.org
BP GO:0034660 ncRNA metabolic process RCA Arabidopsis.org
BP GO:0071482 cellular response to light stimulus IMP Arabidopsis.org
BP GO:0071482 cellular response to light stimulus IEP Arabidopsis.org
BP GO:2001141 regulation of RNA biosynthetic process IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 415 490
IPR007627 RNA_pol_sigma70_r2 336 405
IPR007630 RNA_pol_sigma70_r4 504 556
No external refs found!