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  5. Nbi_g08894

Nbi_g08894


Description : SBP-type transcription factor & original description: none


Gene families : OG0001309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08894

Target Alias Description ECC score Gene Family Method Actions
Adi_g113329 SPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29191 SPL1R2, ATSPL14,... SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12284 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17700 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G052200.1 SPL12, Ceric.10G052200 SBP-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g10513 SPL1 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07726 SPL1 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07092 SPL12 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g50902 SPL1 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02394 SPL1 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g13310 SPL12 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019102 SPL1 SBP-type transcription factor & original description: CDS=1-3150 0.04 OrthoFinder output from all 47 species
Sam_g22813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26324 SPL1 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12976 No alias SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 905 1004
IPR004333 SBP_dom 196 269
No external refs found!