Aliases : MSH7, ATMSH7, MSH6-2
Description : component *(MSH7) of MSH2-x mismatch repair heterodimers & original description: none
Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Nbi_g08811 | |
Cluster | HCCA: Cluster_143 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00029910 | MSH6-1, ATMSH6,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00006p00242090 | MSH7, ATMSH7,... | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00078p00191830 | MSH7, ATMSH7,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0015.g014037 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01015407001 | MSH7, ATMSH7, MSH6-2 | DNA damage response.DNA repair mechanisms.mismatch... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g08540.1 | MSH7, ATMSH7,... | component MSH7 of MSH2-x mismatch repair heterodimers | 0.02 | OrthoFinder output from all 47 species | |
MA_41124g0010 | MSH6-1, ATMSH6, MSH6 | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Mp2g14640.1 | MSH6-1, ATMSH6, MSH6 | component MSH6 of MSH2-x mismatch repair heterodimers | 0.03 | OrthoFinder output from all 47 species | |
Mp7g16850.1 | MSH7, ATMSH7, MSH6-2 | component MSH7 of MSH2-x mismatch repair heterodimers | 0.04 | OrthoFinder output from all 47 species | |
Sam_g16226 | No alias | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g079520.3.1 | MSH6-1, ATMSH6,... | component MSH6 of MSH2-x mismatch repair heterodimers | 0.03 | OrthoFinder output from all 47 species | |
Tin_g08443 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
BP | GO:0006325 | chromatin organization | IEP | HCCA |
BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
BP | GO:0007017 | microtubule-based process | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
BP | GO:0034728 | nucleosome organization | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
No external refs found! |