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  5. Nbi_g08504

Nbi_g08504


Description : not classified & original description: none


Gene families : OG0011047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08504

Target Alias Description ECC score Gene Family Method Actions
Ala_g12670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0327.g065247 No alias not classified & original description: CDS=1-1719 0.04 OrthoFinder output from all 47 species
Cba_g13900 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.17G080200.1 Ceric.17G080200 not classified & original description: pacid=50618435... 0.06 OrthoFinder output from all 47 species
Dcu_g03042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g30163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13619 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g51552 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13670 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047746 chlorophyllase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 752 778
IPR002885 Pentatricopeptide_repeat 178 206
IPR002885 Pentatricopeptide_repeat 484 511
IPR002885 Pentatricopeptide_repeat 649 675
IPR002885 Pentatricopeptide_repeat 281 306
IPR002885 Pentatricopeptide_repeat 720 742
IPR002885 Pentatricopeptide_repeat 544 590
IPR002885 Pentatricopeptide_repeat 377 419
No external refs found!