Nbi_g08356


Description : not classified & original description: none


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08356

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00020480 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G37890 EDA40 Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 OrthoFinder output from all 47 species
Aev_g05488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.24G014600.1 Ceric.24G014600 not classified & original description: pacid=50629291... 0.03 OrthoFinder output from all 47 species
Ceric.37G014900.1 Ceric.37G014900 not classified & original description: pacid=50616887... 0.04 OrthoFinder output from all 47 species
Dde_g10790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009240001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_01603 No alias ubiquitin protein ligase (WAV3) 0.04 OrthoFinder output from all 47 species
Gb_04078 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g04890.1 LOC_Os03g04890 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.02 OrthoFinder output from all 47 species
MA_129331g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_17431g0010 No alias ubiquitin protein ligase (WAV3) 0.03 OrthoFinder output from all 47 species
Mp6g08600.1 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g22747 No alias E3 ubiquitin ligase *(WAV3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g056140.4.1 Solyc05g056140 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g06760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14647 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023000_P002 Zm00001e023000 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e041206_P001 Zm00001e041206 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 72 101
IPR002035 VWF_A 303 484
IPR032838 Vwaint_dom 655 720
No external refs found!