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  5. Nbi_g08317

Nbi_g08317 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Nbi_g08317

Target Alias Description ECC score Gene Family Method Actions
Aev_g05804 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g12115 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g29271 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g10362 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dcu_g50604 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dde_g10398 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Len_g07514 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Msp_g10775 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Pir_g15172 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019602 RNPS1, SR45 not classified & original description: CDS=110-1036 0.03 OrthoFinder output from all 47 species
Spa_g07702 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e028289_P001 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 97 163
No external refs found!