AT1G01040 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : dicer-like 1


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G01040
Cluster HCCA cluster: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000741.30 No alias No description available 0.01 Gene family
Cre07.g345900 No alias No description available 0.03 Gene family
GSVIVT01001045001 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
GSVIVT01019052001 No alias 27.1.20 RNA.processing.degradation dicer Encodes a... 0.02 Gene family
MA_10429678g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a... 0.01 Gene family
MA_10432726g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
MA_10436812g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.01 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.06 Gene family
MA_10437243g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
MA_525318g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a... 0.02 Gene family
MA_6956785g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.01 Gene family
Smo444049 PACid_15413649 27.1.20 RNA.processing.degradation dicer Encodes an... 0.05 Gene family
Smo74321 PACid_15409014 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
Smo86110 PACid_15420555 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.05 Gene family
Solyc10g005130.3.1 Solyc10g005130.3 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
Zm00001d025830 GRMZM2G024466,... 27.1.20 RNA.processing.degradation dicer Encodes an... 0.05 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Arabidopsis.org
BP GO:0000278 mitotic cell cycle RCA Arabidopsis.org
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
MF GO:0003725 double-stranded RNA binding IDA Arabidopsis.org
MF GO:0004525 ribonuclease III activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0006396 RNA processing ISS Arabidopsis.org
BP GO:0006396 RNA processing RCA Arabidopsis.org
BP GO:0007267 cell-cell signaling RCA Arabidopsis.org
MF GO:0008026 ATP-dependent helicase activity ISS Arabidopsis.org
BP GO:0009616 virus induced gene silencing IMP Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0009630 gravitropism RCA Arabidopsis.org
BP GO:0009880 embryonic pattern specification IMP Arabidopsis.org
BP GO:0009908 flower development TAS Arabidopsis.org
BP GO:0010050 vegetative phase change RCA Arabidopsis.org
BP GO:0010098 suspensor development IMP Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem IMP Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference IMP Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
CC GO:0010445 nuclear dicing body IDA Arabidopsis.org
BP GO:0010599 production of lsiRNA involved in RNA interference IMP Arabidopsis.org
BP GO:0016569 covalent chromatin modification RCA Arabidopsis.org
BP GO:0030422 production of siRNA involved in RNA interference IMP Arabidopsis.org
BP GO:0031047 gene silencing by RNA RCA Arabidopsis.org
BP GO:0031053 primary miRNA processing TAS Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IGI Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
BP GO:0035279 mRNA cleavage involved in gene silencing by miRNA IMP Arabidopsis.org
BP GO:0051607 defense response to virus RCA Arabidopsis.org
BP GO:2000034 regulation of seed maturation IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 840 928
IPR000999 RNase_III_dom 1375 1518
IPR000999 RNase_III_dom 1594 1707
IPR003100 PAZ_dom 1202 1338
IPR006935 Helicase/UvrB_N 254 415
IPR001650 Helicase_C 648 765
No external refs found!