Nbi_g08254

Description : mTERF-type transcription factor & original description: none

Gene families : OG0004085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004085_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g08254

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00229610	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00092p00098850	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AT2G34620	No alias	Mitochondrial transcription termination factor family protein	0.06	OrthoFinder output from all 47 species
Aev_g03272	No alias	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g06498	EMB93, SOLDAT10	mTERF-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Als_g16455	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g04372	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene34423.t1	Aspi01Gene34423	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.25G071000.1	EMB93, SOLDAT10,...	mTERF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g09464	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01031956001	No alias	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
LOC_Os03g57149.1	LOC_Os03g57149	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Ore_g16465	No alias	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g16248	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g109550.2.1	Solyc01g109550	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	423	534
IPR003690	MTERF	493	652

External Links

No external refs found!

Nbi_g08254

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation