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  5. Nbi_g07886

Nbi_g07886 (ATPCNA1, PCNA1)


Aliases : ATPCNA1, PCNA1

Description : sliding clamp protein *(PCNA) & original description: none


Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


DescriptionType Description Actions
Neighborhood HRR: Nbi_g07886

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259890 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00198200 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
AT1G07370 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 0.04 OrthoFinder output from all 47 species
Adi_g020149 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05666 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07143 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g50349 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11632 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20041 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47926.t1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0072.g036936 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: CDS=1-1224 0.03 OrthoFinder output from all 47 species
Cba_g09705 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G042200.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.141 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.67 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
Dac_g03057 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g40322 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024815001 PCNA2, ATPCNA2 Cell cycle.interphase.DNA... 0.05 OrthoFinder output from all 47 species
Gb_11143 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.06 OrthoFinder output from all 47 species
LOC_Os02g56130.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.03 OrthoFinder output from all 47 species
Len_g11664 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g30418 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
MA_83835g0010 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.06 OrthoFinder output from all 47 species
Mp2g02690.1 PCNA2, ATPCNA2 sliding clamp protein (PCNA) 0.03 OrthoFinder output from all 47 species
Mp5g08780.1 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.02 OrthoFinder output from all 47 species
Msp_g09130 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc06g076660.3.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.06 OrthoFinder output from all 47 species
Spa_g12144 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12145 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g51877 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g12734 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e016159_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.05 OrthoFinder output from all 47 species
Zm00001e023660_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006275 regulation of DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR022649 Pr_cel_nuc_antig_C 127 254
IPR022648 Pr_cel_nuc_antig_N 1 125
No external refs found!