AT1G03100


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0003417 (SeedPlants) Phylogenetic Tree(s): OG_03_0003417_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G03100
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 Archaeplastida
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 Archaeplastida
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 Archaeplastida
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 LandPlants
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 LandPlants
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.02 LandPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 LandPlants
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 SeedPlants
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 SeedPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 552 597
IPR002885 Pentatricopeptide_repeat 638 684
IPR002885 Pentatricopeptide_repeat 334 361
IPR002885 Pentatricopeptide_repeat 502 527
No external refs found!