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  5. Nbi_g07486

Nbi_g07486


Description : splicing factor *(PRP38) & original description: none


Gene families : OG0004863 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004863_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g07486

Target Alias Description ECC score Gene Family Method Actions
Als_g58256 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07521 No alias splicing factor *(PRP38) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031188001 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Mp4g12850.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e009450_P001 Zm00001e009450 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 11 173
No external refs found!