GSVIVT01037136001


Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions. auxin response factor 1 (ARF1)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01037136001
Cluster HCCA cluster: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT1G35540 ARF14 auxin response factor 14 0.02 Gene family
LOC_Os01g70270 Os01g0927600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os02g35140 Os02g0557200 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os04g57610 Os04g0671900 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os06g48950 Os06g0702600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_10022392g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_5089g0010 No alias No description available 0.03 Gene family
Solyc12g042077.1.1 Solyc12g042077.1 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d031064 GRMZM2G081158 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d041497 GRMZM2G073750 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d043431 GRMZM2G056120 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 125 225
IPR010525 Auxin_resp 251 333
IPR033389 AUX/IAA_dom 488 609
No external refs found!