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  5. Nbi_g07072

Nbi_g07072


Description : not classified & original description: none


Gene families : OG0013231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g07072

Target Alias Description ECC score Gene Family Method Actions
Ala_g12590 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54939 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69073 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.06G079800.1 Ceric.06G079800 not classified & original description: pacid=50620633... 0.05 OrthoFinder output from all 47 species
Len_g13916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06286 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 820 844
IPR002885 Pentatricopeptide_repeat 336 384
IPR002885 Pentatricopeptide_repeat 754 798
IPR002885 Pentatricopeptide_repeat 536 582
IPR002885 Pentatricopeptide_repeat 857 875
IPR002885 Pentatricopeptide_repeat 726 746
IPR002885 Pentatricopeptide_repeat 411 437
IPR002885 Pentatricopeptide_repeat 510 531
IPR002885 Pentatricopeptide_repeat 639 669
IPR002885 Pentatricopeptide_repeat 611 635
IPR002885 Pentatricopeptide_repeat 238 263
No external refs found!