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  5. Nbi_g06821

Nbi_g06821 (CTS, ACN2, PED3, AtABCD1, PXA1)


Aliases : CTS, ACN2, PED3, AtABCD1, PXA1

Description : subfamily ABCD transporter & original description: none


Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06821

Target Alias Description ECC score Gene Family Method Actions
Aev_g11144 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62794.t1 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08997 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16771 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02451 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.05 OrthoFinder output from all 47 species
MA_10435403g0010 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.03 OrthoFinder output from all 47 species
MA_10437109g0030 CTS, ACN2, PED3,... subfamily ABCD transporter 0.02 OrthoFinder output from all 47 species
MA_526197g0010 CTS, ACN2, PED3,... ABC transporter D family member 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc04g055120.3.1 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 457 602
IPR003439 ABC_transporter-like_ATP-bd 1110 1275
IPR011527 ABC1_TM_dom 738 1004
IPR011527 ABC1_TM_dom 84 352
No external refs found!