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  5. Nbi_g06704

Nbi_g06704


Description : chaperone *(Hsp60) & original description: none


Gene families : OG0000688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000688_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06704
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00080200 CH-CPN60A,... External stimuli response.temperature.Hsp... 0.03 OrthoFinder output from all 47 species
AT5G18820 EMB3007 TCP-1/cpn60 chaperonin family protein 0.03 OrthoFinder output from all 47 species
Adi_g008942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013083 No alias chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03270 No alias chaperone *(Hsp60) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08596 CPN60B, LEN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g38980.1 EMB3007, LOC_Os09g38980 subunit alpha of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Len_g59695 CPN60B, LEN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp1g21640.1 No alias subunit beta of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Solyc01g028810.3.1 Solyc01g028810 subunit beta of Cpn60 chaperonin complex. component... 0.03 OrthoFinder output from all 47 species
Solyc03g120850.4.1 CPN60B, LEN1,... subunit beta of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Tin_g27931 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e025409_P001 Zm00001e025409 subunit beta of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 85 588
No external refs found!