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  5. Nbi_g06541

Nbi_g06541


Description : component *(eS10) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001341 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250710 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
AT4G25740 No alias RNA binding Plectin/S10 domain-containing protein 0.05 OrthoFinder output from all 47 species
AT5G41520 No alias RNA binding Plectin/S10 domain-containing protein 0.03 OrthoFinder output from all 47 species
AT5G52650 No alias RNA binding Plectin/S10 domain-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g125689 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aev_g23733 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g25175 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g68055 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025251 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.11G066500.1 Ceric.11G066500 component *(eS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.23G017600.1 Ceric.23G017600 component *(eS10) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.5 No alias 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
GSVIVT01019409001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01028854001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Gb_10517 No alias component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_10518 No alias component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os01g73160.1 LOC_Os01g73160 component RPS10 of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os04g35090.1 LOC_Os04g35090 component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
Lfl_g30568 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_111018g0010 No alias component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_314020g0010 No alias component RPS10 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp2g00580.1 No alias component RPS10 of SSU proteome 0.06 OrthoFinder output from all 47 species
Msp_g16642 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pp3c10_21170V3.1 Pp3c10_21170 RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Pp3c14_1810V3.1 Pp3c14_1810 RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Pp3c23_13100V3.1 Pp3c23_13100 RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Pp3c24_2340V3.1 Pp3c24_2340 RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Ppi_g25015 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g14221 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo37555 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc01g099670.3.1 Solyc01g099670 component RPS10 of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc12g096540.2.1 Solyc12g096540 component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g13745 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g14505 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g21377 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g43220 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g22537 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e008107_P001 Zm00001e008107 component RPS10 of SSU proteome 0.06 OrthoFinder output from all 47 species
Zm00001e028280_P001 Zm00001e028280 component RPS10 of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e040881_P001 Zm00001e040881 component RPS10 of SSU proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004107 chorismate synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 3 94
No external refs found!