MA_42406g0010


Description : chromatin remodeling factor (DDM1)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0005519 (LandPlants) Phylogenetic Tree(s): OG_02_0005519_tree ,
OG_03_0005694 (SeedPlants) Phylogenetic Tree(s): OG_03_0005694_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_42406g0010
Cluster HCCA: Cluster_540

Target Alias Description ECC score Gene Family Method Actions
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Cpa|evm.model.tig00000144.188 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.09 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Pp3c2_18470V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c7_3340V3.1 No alias chromatin-remodeling protein 11 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.08 LandPlants
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.08 LandPlants
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.03 LandPlants
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.05 LandPlants
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.04 LandPlants
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.02 LandPlants
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.04 LandPlants
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.07 LandPlants
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 LandPlants
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.05 LandPlants
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.06 SeedPlants
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.03 SeedPlants
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.04 SeedPlants
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.03 SeedPlants
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.06 SeedPlants
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 SeedPlants
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000330 SNF2_dom 291 580
IPR001650 Helicase_C 603 700
No external refs found!