Nbi_g06293


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06293

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250660 OTP84,... Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Adi_g022147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g46737 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11484 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35854 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50814 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16103 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18162 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g57040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70432 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene01906.t1 Aspi01Gene01906 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene04806.t1 Aspi01Gene04806 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07836.t1 REME1, Aspi01Gene07836 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18568.t1 Aspi01Gene18568 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26812.t1 Aspi01Gene26812 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28263.t1 CRR22, Aspi01Gene28263 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34514.t1 Aspi01Gene34514 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41775.t2 Aspi01Gene41775 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43919.t1 OTP84, Aspi01Gene43919 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58744.t1 EMB2758, Aspi01Gene58744 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66051.t1 OTP84, Aspi01Gene66051 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0503.g073910 No alias not classified & original description: CDS=59-2179 0.03 OrthoFinder output from all 47 species
Cba_g15366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20724 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29838 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G047700.1 Ceric.02G047700 not classified & original description: pacid=50586056... 0.05 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.06 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.04 OrthoFinder output from all 47 species
Ceric.11G080200.1 Ceric.11G080200 not classified & original description: pacid=50595969... 0.05 OrthoFinder output from all 47 species
Ceric.14G094700.1 EMB2758, Ceric.14G094700 not classified & original description: pacid=50634278... 0.04 OrthoFinder output from all 47 species
Ceric.29G083600.1 Ceric.29G083600 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000342.38 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dac_g03810 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05151 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g15087 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18832 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g27114 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32204 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g35237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36371 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g37683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g38568 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g40815 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g42858 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45812 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26473 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g07778 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21664 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21669 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23401 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23295 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000034001 MEF19 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os01g19380.1 LOC_Os01g19380 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.05 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.03 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.04 OrthoFinder output from all 47 species
LOC_Os12g36620.1 LOC_Os12g36620 Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Len_g23141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06599 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34247 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07674 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g29119 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g21989 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g36408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g03294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g04419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g12011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g27968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29940 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g45358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46005 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g56263 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007526 No alias not classified & original description: CDS=1-1728 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018685 No alias not classified & original description: CDS=1-1332 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020215 No alias not classified & original description: CDS=1-5316 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s1579.g028098 No alias not classified & original description: CDS=1-249 0.05 OrthoFinder output from all 47 species
Sam_g19039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo126194 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Smo16626 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.04 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 OrthoFinder output from all 47 species
Smo429215 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
Spa_g33897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20109 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21261 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35082 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e023800_P003 PDE247, CLB19,... RNA editing factor (CLB19) 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 642 689
IPR002885 Pentatricopeptide_repeat 237 287
IPR002885 Pentatricopeptide_repeat 415 437
IPR002885 Pentatricopeptide_repeat 213 235
IPR002885 Pentatricopeptide_repeat 314 334
IPR002885 Pentatricopeptide_repeat 443 473
IPR046848 E_motif 762 822
IPR002885 Pentatricopeptide_repeat 541 589
IPR002885 Pentatricopeptide_repeat 340 386
IPR002885 Pentatricopeptide_repeat 138 186
No external refs found!