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  5. Nbi_g06043

Nbi_g06043


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0001320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001320_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06043
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT5G66070 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g01022 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ala_g15552 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Aop_g03745 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00810.t1 Aspi01Gene00810 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38278.t1 Aspi01Gene38278 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g06734 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g02649 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os09g37050.1 NIP2, LOC_Os09g37050 NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_119038g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g00986 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015826 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc02g083400.3.1 NIP2, Solyc02g083400 NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g09669 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g50999 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g56954 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Zm00001e015805_P001 Zm00001e015805 NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 208 251
No external refs found!