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  5. Nbi_g05874

Nbi_g05874 (PUM7, APUM7)


Aliases : PUM7, APUM7

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05874

Target Alias Description ECC score Gene Family Method Actions
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.03 OrthoFinder output from all 47 species
Azfi_s0255.g060478 PUM7, APUM7 not classified & original description: CDS=1-1518 0.03 OrthoFinder output from all 47 species
Tin_g06123 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 695 721
IPR001313 Pumilio_RNA-bd_rpt 804 820
IPR001313 Pumilio_RNA-bd_rpt 765 798
IPR001313 Pumilio_RNA-bd_rpt 618 651
IPR001313 Pumilio_RNA-bd_rpt 654 684
IPR001313 Pumilio_RNA-bd_rpt 730 762
IPR001313 Pumilio_RNA-bd_rpt 837 871
IPR001313 Pumilio_RNA-bd_rpt 875 908
No external refs found!