Nbi_g05686 (SHP2, AGL5)

Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g05686

Target	Alias	Description	ECC score	Gene Family Method
Adi_g010317	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g072612	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g11796	AGL104	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05601.t1	STK, AGL11,...	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene12152.t1	AGL42, Aspi01Gene12152	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene49755.t1	Aspi01Gene49755	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53310.t1	AGL16, Aspi01Gene53310	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54037.t3	Aspi01Gene54037	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0003.g007710	AGL6	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g09207	AGL13	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g27246	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g10603	AGL42	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g50123	AGL3, SEP4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g56878	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g13457	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g07382	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g24287	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g41762	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01864	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g19814	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g58877	AGL30	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g57086	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g59142	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g61246	AGL21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000222	AGL33	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g06486	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g06712	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15354	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18903	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26914	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g33302	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g50341	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo437868	AGL29	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Spa_g09518	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g20318	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005811	lipid droplet	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	100	147
IPR002487	TF_Kbox	174	260

External Links

No external refs found!

Nbi_g05686 (SHP2, AGL5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation