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  5. Nbi_g05620

Nbi_g05620 (AtRABG3d, RABG3d)


Aliases : AtRABG3d, RABG3d

Description : G-class RAB GTPase & original description: none


Gene families : OG0000908 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000908_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05620
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Aop_g09532 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g12280 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 39 species
Dac_g04485 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 39 species
Dcu_g14494 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 39 species
Msp_g03381 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 39 species
Spa_g53072 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 39 species
Tin_g04335 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 177
No external refs found!