Nbi_g05439


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05439

Target Alias Description ECC score Gene Family Method Actions
Adi_g004271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033460 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036834 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g083433 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07462 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05696 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05758 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06720 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26681 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07418 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g13913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27603 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16819 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27203 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68104 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01267.t1 CRR2, Aspi01Gene01267 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17592.t1 Aspi01Gene17592 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27806.t1 CRR2, Aspi01Gene27806 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008511 No alias not classified & original description: CDS=1-792 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011650 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2676 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025464 No alias not classified & original description: CDS=1-2154 0.04 OrthoFinder output from all 47 species
Azfi_s0036.g025743 No alias not classified & original description: CDS=1-2553 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042774 No alias not classified & original description: CDS=1-2433 0.04 OrthoFinder output from all 47 species
Azfi_s0106.g045082 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-2640 0.03 OrthoFinder output from all 47 species
Azfi_s0280.g062299 OSB3 ssDNA-binding protein *(OSB) & original description: CDS=94-1002 0.03 OrthoFinder output from all 47 species
Azfi_s1835.g107332 CRR22 not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Cba_g03375 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g04726 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20779 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29878 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32456 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34536 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.03 OrthoFinder output from all 47 species
Ceric.04G034300.1 VAC1, ECB2,... not classified & original description: pacid=50630708... 0.03 OrthoFinder output from all 47 species
Ceric.07G042200.1 Ceric.07G042200 not classified & original description: pacid=50626031... 0.03 OrthoFinder output from all 47 species
Ceric.09G060800.1 Ceric.09G060800 not classified & original description: pacid=50588416... 0.04 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.05 OrthoFinder output from all 47 species
Ceric.18G033700.1 OTP86, Ceric.18G033700 not classified & original description: pacid=50622086... 0.04 OrthoFinder output from all 47 species
Ceric.18G077200.1 Ceric.18G077200 not classified & original description: pacid=50621761... 0.04 OrthoFinder output from all 47 species
Ceric.18G077400.1 Ceric.18G077400 not classified & original description: pacid=50622022... 0.07 OrthoFinder output from all 47 species
Ceric.21G004200.1 Ceric.21G004200 not classified & original description: pacid=50602673... 0.04 OrthoFinder output from all 47 species
Ceric.27G011000.1 Ceric.27G011000 not classified & original description: pacid=50605840... 0.04 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.03 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.03 OrthoFinder output from all 47 species
Ceric.35G018800.1 Ceric.35G018800 not classified & original description: pacid=50580757... 0.03 OrthoFinder output from all 47 species
Ceric.35G058500.1 Ceric.35G058500 not classified & original description: pacid=50581681... 0.07 OrthoFinder output from all 47 species
Ceric.36G048700.1 Ceric.36G048700 not classified & original description: pacid=50569051... 0.04 OrthoFinder output from all 47 species
Ceric.36G059800.1 Ceric.36G059800 not classified & original description: pacid=50568853... 0.04 OrthoFinder output from all 47 species
Ceric.39G004000.1 EMB2758, Ceric.39G004000 not classified & original description: pacid=50582620... 0.03 OrthoFinder output from all 47 species
Dac_g27799 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12504 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50046 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03480 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04874 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04892 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13603 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18082 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18127 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19140 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22021 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22368 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g22999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26461 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g28915 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g30475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g39055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47197 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47826 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g49689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49987 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18961 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18973 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30657 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07688 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07787 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10311934g0010 MEF22 Pentatricopeptide repeat-containing protein At1g15510,... 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Msp_g06015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22834 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47992 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g48606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13489 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13547 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13601 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14870 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57075 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57076 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03926 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05345 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06822 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g06968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07585 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08728 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22185 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32073 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33120 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g40056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43670 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53964 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54829 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56081 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56599 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g59290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59302 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004577 No alias not classified & original description: CDS=1-1743 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g30280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g47343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.04 OrthoFinder output from all 47 species
Spa_g08436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12995 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 278 325
IPR002885 Pentatricopeptide_repeat 380 428
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 177 223
IPR002885 Pentatricopeptide_repeat 50 71
IPR002885 Pentatricopeptide_repeat 253 276
IPR002885 Pentatricopeptide_repeat 150 171
No external refs found!