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  5. Nbi_g05422

Nbi_g05422 (HSL1, VAL2, HSI2-L1)


Aliases : HSL1, VAL2, HSI2-L1

Description : LAV-VAL-type transcription factor & original description: none


Gene families : OG0001383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05422

Target Alias Description ECC score Gene Family Method Actions
Aev_g27437 HSL1, VAL2, HSI2-L1 LAV-VAL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22980.t1 HSL1, VAL2,... LAV-VAL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27144 HSL1, VAL2, HSI2-L1 LAV-VAL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003212001 HSL1, VAL2, HSI2-L1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_31557 HSL1, VAL2, HSI2-L1 transcription factor (LAV-VAL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
InterPro domains Description Start Stop
IPR011124 Znf_CW 543 585
IPR003340 B3_DNA-bd 270 370
No external refs found!