AT1G01080


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0010997 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010997_tree ,
OG_02_0010955 (LandPlants) Phylogenetic Tree(s): OG_02_0010955_tree ,
OG_03_0010931 (SeedPlants) Phylogenetic Tree(s): OG_03_0010931_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G01080
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00087410 evm_27.TU.AmTr_v1... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.08 Archaeplastida
GSVIVT01027441001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.25 Archaeplastida
Gb_28108 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
LOC_Os08g02390.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... 0.13 Archaeplastida
MA_136464g0010 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
MA_482994g0010 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.07 Archaeplastida
Zm00001e029208_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.16 Archaeplastida
AMTR_s00100p00087410 evm_27.TU.AmTr_v1... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.08 LandPlants
GSVIVT01027441001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.24 LandPlants
Gb_28108 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 LandPlants
LOC_Os08g02390.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... 0.12 LandPlants
MA_136464g0010 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 LandPlants
MA_482994g0010 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 LandPlants
Zm00001e029208_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.17 LandPlants
AMTR_s00100p00087410 evm_27.TU.AmTr_v1... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.08 SeedPlants
GSVIVT01027441001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.24 SeedPlants
Gb_28108 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 SeedPlants
LOC_Os08g02390.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... 0.12 SeedPlants
MA_136464g0010 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 SeedPlants
MA_482994g0010 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 SeedPlants
Zm00001e029208_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.17 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
BP GO:0006655 phosphatidylglycerol biosynthetic process RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 214 282
IPR000504 RRM_dom 110 180
No external refs found!