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  5. Nbi_g05259

Nbi_g05259 (TOM1, ATTOM1)


Aliases : TOM1, ATTOM1

Description : tobamovirus multiplication replication host factor *(TOM1) & original description: none


Gene families : OG0000961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05259
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Adi_g024423 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.03 OrthoFinder output from all 47 species
Ala_g09446 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.06 OrthoFinder output from all 47 species
Ceric.22G056900.1 TOM1, ATTOM1,... tobamovirus multiplication replication host factor... 0.04 OrthoFinder output from all 47 species
Gb_34342 TOM3 TOM1 tobamovirus multiplication replication host factor 0.03 OrthoFinder output from all 47 species
Lfl_g05447 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.04 OrthoFinder output from all 47 species
Mp3g00660.1 TOM3 TOM1 tobamovirus multiplication replication host factor 0.03 OrthoFinder output from all 47 species
Ppi_g28986 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009555 pollen development IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR009457 THH1/TOM1/TOM3_dom 28 299
No external refs found!