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  5. Nbi_g05238

Nbi_g05238


Description : component *(uL10) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000839 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05238
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Adi_g099825 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g13520 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 39 species
Aspi01Gene70147.t1 Aspi01Gene70147 component *(uL10) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Azfi_s0024.g020356 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Azfi_s0492.g073531 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Cba_g05117 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ceric.18G048600.1 Ceric.18G048600 component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species
Dac_g01446 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Dcu_g00958 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Dde_g07199 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Len_g16154 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Len_g21357 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Lfl_g24646 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
MA_10433058g0020 No alias component RPP0 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Msp_g27434 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 39 species
Ore_g06033 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Pir_g10636 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Sacu_v1.1_s0012.g005433 No alias component *(cpTatC) of thylakoid membrane Tat... 0.01 OrthoFinder output from all 39 species
Sam_g09753 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Sam_g09883 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Spa_g56101 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 39 species
Tin_g14132 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 8 108
IPR040637 RL10P_insert 114 183
No external refs found!