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  5. Nbi_g05232

Nbi_g05232 (SKL2)


Aliases : SKL2

Description : not classified & original description: none


Gene families : OG0007627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05232

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00123660 SKL2,... Probable inactive shikimate kinase like 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
AT2G35500 SKL2 shikimate kinase like 2 0.09 OrthoFinder output from all 47 species
Adi_g050002 SKL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g21027 SKL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10646 SKL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0112.g045783 SKL2 not classified & original description: CDS=1-945 0.08 OrthoFinder output from all 47 species
Ceric.04G066700.1 SKL2, Ceric.04G066700 not classified & original description: pacid=50632352... 0.02 OrthoFinder output from all 47 species
Cre16.g659850 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g07950 SKL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g18069 SKL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013108001 SKL2 Probable inactive shikimate kinase like 2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Gb_11341 SKL2 Probable inactive shikimate kinase like 2, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os10g42700.1 SKL2, LOC_Os10g42700 Probable inactive shikimate kinase like 2, chloroplastic... 0.09 OrthoFinder output from all 47 species
Lfl_g01171 SKL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10096g0010 SKL2 Probable inactive shikimate kinase like 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Msp_g06547 SKL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20217 SKL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0165.g024110 SKL2 not classified & original description: CDS=138-1466 0.04 OrthoFinder output from all 47 species
Sam_g39135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo118907 SKL2 Probable inactive shikimate kinase like 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc08g076410.4.1 SKL2, Solyc08g076410 Probable inactive shikimate kinase like 2, chloroplastic... 0.05 OrthoFinder output from all 47 species
Spa_g16044 SKL2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e002481_P001 SKL2, Zm00001e002481 Probable inactive shikimate kinase like 2, chloroplastic... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR031322 Shikimate/glucono_kinase 194 282
IPR007052 CS_dom 71 151
No external refs found!