Nbi_g05006


Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05006

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 ESP4,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
Als_g09476 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Als_g23718 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aop_g08267 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010125 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Cba_g05336 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01009244001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
GSVIVT01011157001 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os01g49940.1 LOC_Os01g49940 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os07g49320.1 ESP4, LOC_Os07g49320 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Lfl_g06265 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
MA_433916g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g27266 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Pir_g12624 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ppi_g15043 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Solyc09g005330.3.1 ESP4, Solyc09g005330 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Solyc09g005340.3.1 ESP4, Solyc09g005340 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g15317 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022075 Symplekin_C 1121 1299
IPR032460 Symplekin/Pta1_N 102 303
No external refs found!