Nbi_g04633 (RABA2b, ATRAB-A2B,...)

Aliases : RABA2b, ATRAB-A2B, ATRABA2B, RAB-A2B

Description : A-class RAB GTPase & original description: none

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04633

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00103890	AtRABA6b,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
AMTR_s00108p00139240	AtRABA1f,...	Ras-related protein RABA1f OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G09630	ATRABA2A,...	RAB GTPase 11C	0.02	OrthoFinder output from all 47 species
Aev_g17596	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18147	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g00731	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g30591	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08482	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g10560	ATRABA2A,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09683	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22467	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g42193	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0158.g053866	ATRABA2A,...	A-class RAB GTPase & original description: CDS=282-950	0.03	OrthoFinder output from all 47 species
Cba_g00782	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.97	AtRABA1e, RABA1e	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Cre03.g189250	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Dac_g05558	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g27746	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g00471	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014250001	AtRABA1f, RABA1f	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
LOC_Os03g62600.1	ATRABA2A,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os05g01480.1	ATRABA2A,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Len_g03672	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Len_g15896	ATRABA2A,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16053	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g28666	AtRABA5d, RABA5d	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18286	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
MA_15386g0010	AtRABA1f, RABA1f	A-class RAB GTPase	0.01	OrthoFinder output from all 47 species
MA_18685g0010	AtRABA5d, RABA5d	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Msp_g09974	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g14192	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02175	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19758	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08711	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g61287	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011299	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=186-836	0.03	OrthoFinder output from all 47 species
Solyc12g014080.2.1	AtRABA1f,...	A-class RAB GTPase	0.01	OrthoFinder output from all 47 species
Spa_g07580	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g16289	ATRABA2A,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g27440	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e003625_P001	ATRABA5C, ARA4,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e020213_P001	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e027669_P001	ATRABA2A,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e030680_P001	ATHSGBP, RABA1d,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e031368_P002	RAB-A2C,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e032148_P001	ATRABA1B, RAB11,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e033825_P001	AtRABA1f,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	21	181

External Links

No external refs found!

Nbi_g04633 (RABA2b, ATRAB-A2B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation