Nbi_g04609

Description : component *(uL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04609

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00144180	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AMTR_s00089p00040540	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
AT3G07110	No alias	Ribosomal protein L13 family protein	0.05	OrthoFinder output from all 47 species
AT3G24830	No alias	Ribosomal protein L13 family protein	0.11	OrthoFinder output from all 47 species
AT4G13170	No alias	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
AT5G48760	No alias	Ribosomal protein L13 family protein	0.09	OrthoFinder output from all 47 species
Adi_g108658	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g06438	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g12384	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g06902	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g09537	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g22675	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0075.g037721	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0272.g061284	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0594.g078801	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.05G058300.1	Ceric.05G058300	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.20G024700.1	Ceric.20G024700	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000792.29	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Cre12.g532550	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dac_g00316	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g06037	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g34535	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g02053	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01021080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01028661001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os03g54890.1	LOC_Os03g54890	component RPL13a of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os07g01870.1	LOC_Os07g01870	component RPL13a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g10030	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g21734	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_186340g0010	No alias	component RPL13a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Msp_g06781	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g27149	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g12434	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g10936	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g10938	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g01822	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_17280V3.1	Pp3c11_17280	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Pp3c19_10330V3.1	Pp3c19_10330	Ribosomal protein L13 family protein	0.06	OrthoFinder output from all 47 species
Pp3c1_15830V3.1	Pp3c1_15830	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Pp3c2_20550V3.1	Pp3c2_20550	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Ppi_g18014	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05746	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g07579	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g14122	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g31286	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo166650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc05g053670.3.1	Solyc05g053670	component RPL13a of LSU proteome component	0.09	OrthoFinder output from all 47 species
Solyc09g091740.4.1	Solyc09g091740	component RPL13a of LSU proteome component	0.09	OrthoFinder output from all 47 species
Spa_g10532	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g15627	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g15628	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Tin_g00453	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Zm00001e005719_P002	Zm00001e005719	component RPL13a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e012017_P002	Zm00001e012017	component RPL13a of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005247	voltage-gated chloride channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
MF	GO:0005254	chloride channel activity	IEP	HCCA
MF	GO:0005484	SNAP receptor activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006821	chloride transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0010024	phytochromobilin biosynthetic process	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015108	chloride transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016636	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051202	phytochromobilin metabolic process	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	11	116

External Links

No external refs found!

Nbi_g04609

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation