Nbi_g04397


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04397

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
Adi_g004364 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g067897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g084267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11596 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g17869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18197 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20072 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g22000 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32661 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g32981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25195 EMB2758 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g30728 No alias ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g33117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20358.t1 Aspi01Gene20358 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33810.t1 Aspi01Gene33810 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55840.t1 Aspi01Gene55840 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61596.t1 CRR2, Aspi01Gene61596 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63483.t1 CRR22, Aspi01Gene63483 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene71957.t1 EMB2261, Aspi01Gene71957 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11909 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20483 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20741 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g26795 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29842 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29871 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34546 No alias ssDNA-binding protein *(OSB) & original description: none 0.09 OrthoFinder output from all 47 species
Cba_g34719 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35128 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g46020 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g67638 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67793 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g74881 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g77402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.39G023200.1 CRR2, Ceric.39G023200 not classified & original description: pacid=50582462... 0.05 OrthoFinder output from all 47 species
Dac_g18724 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g31749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g45717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36056 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37654 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42218 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50102 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g05757 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g26705 CRR21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012461001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
GSVIVT01017996001 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Len_g04350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21178 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54668 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g54934 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56629 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07335 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g33302 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14080 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17740 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g18240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28205 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g28217 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g29683 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34152 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g40180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g42980 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g45075 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g46846 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05809 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06770 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21730 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c17_4940V3.1 Pp3c17_4940 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g18927 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53953 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g59333 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11177 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27190 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g50768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02170 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g03804 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g04965 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05116 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28482 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g44131 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44215 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g44227 No alias ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 282 308
IPR002885 Pentatricopeptide_repeat 354 379
IPR002885 Pentatricopeptide_repeat 80 108
IPR002885 Pentatricopeptide_repeat 452 477
IPR002885 Pentatricopeptide_repeat 382 412
IPR002885 Pentatricopeptide_repeat 253 273
IPR046848 E_motif 598 660
IPR002885 Pentatricopeptide_repeat 177 224
IPR002885 Pentatricopeptide_repeat 481 528
No external refs found!